Advanced Methods 🔬

Inspirational Works

Tutorial: guidelines for the computational analysis of single-cell RNA sequencing data

Tutorial: guidelines for the computational analysis of single-cell RNA sequencing data
Andrews, Kiselev, McCarthy, et al.
Nat Protoc, 16, 1–9 (2021)

journal URL

Super-resolved spatial transcriptomics by deep data fusion

Super-resolved spatial transcriptomics by deep data fusion
Bergenstråhle, He, et al.
Nat Biotechnol, 40, 476–479 (2022)

journal URL

Mapping the topography of spatial gene expression with interpretable deep learning

Mapping the topography of spatial gene expression with interpretable deep learning
Chitra, Arnold, Sarkar, et al.
Nat Methods, 22, 298–309 (2025)

journal URL

Bacterial droplet-based single-cell RNA-seq reveals antibiotic-associated heterogeneous cellular states

Bacterial droplet-based single-cell RNA-seq reveals antibiotic-associated heterogeneous cellular states
Ma, Amemiya, He, Gandhi, Nicol, Bhattacharyya, Smillie, Hung
Cell, 186, 877-891.e14 (2023)

journal URL

Method of the Year: spatially resolved transcriptomics

Method of the Year: spatially resolved transcriptomics
Marx
Nat Methods, 18, 9–14 (2021)

journal URL

Method of the Year 2024: spatial proteomics

Method of the Year 2024: spatial proteomics
Nature Methods Editorial
Nat Methods, 21, 2195–2196 (2024)

journal URL

High-definition spatial transcriptomic profiling of immune cell populations in colorectal cancer

High-definition spatial transcriptomic profiling of immune cell populations in colorectal cancer
Oliveira, Romero, Chung, et al.
Nat Genet, 57, 1512–1523 (2025)

journal URL

Dissecting microbial communities with single-cell transcriptome analysis

Dissecting microbial communities with single-cell transcriptome analysis
Pountain, Yanai
Science, 389, eadp6252 (2025)

journal URL

Spatially resolved mapping of cells associated with human complex traits

Spatially resolved mapping of cells associated with human complex traits
Song, Chen, Hou, et al.
Nature, 641, 932–941 (2025)

journal URL

No matching items

Lab Publications

No matching items

Discussion